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Keto Low-Carb Bagels

These Easy Keto Low-Carb Everything Bagels are the best quick recipe using almond flour fathead dough with only 2 net carbs each. Each gluten-free bagel is loaded with flavor and seasoned with Everything, But the Bagel Seasoning.

cooked keto fathead bagels on a blue plate with cream cheese
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Everyone is tired of eating the same breakfast. Trust me, I get it. Bacon and eggs are only good for so long. But what if you piled your bacon and eggs onto a bagel? A KETO BAGEL! That’s exactly what I did. I added fresh spinach, too!

ingredients for cooked keto fathead bagels

everything but the bagel seasoning

How to Make Keto Low Carb Bagels

Detailed measurements and full instructions can be found in the recipe card at the bottom of this post.

  1. You will need to microwave mozzarella cheese and cream cheese. Next, add almond flour and eggs.
  2. Stir and combine to form a dough.
keto fathead bagel dough in a bowl
keto fathead bagel dough in a bowl
keto fathead bagel dough

How Many Carbs

There are 2 net carbs in these keto fathead bagels, compared to 44 net carbs in traditional bagels.

Which Bread Has the Least Amount of Carbohydrates?

Ezekial Flax bread is pretty low in carbs, but not low enough for ketosis (in my opinion). You can read more about Ezekial Bread and Sugar Free Staples here.

keto fathead bagel dough on a baking mat

Additional Toppings and Add-ins

keto fathead bagel dough on a baking mat
cooked keto fathead bagels on a baking mat

What Can I Substitute for Bread?

Fathead dough can go a long way. I’ve used it to make Keto Biscuits, Keto Cinnamon Rolls, and Keto Pizza.

cooked keto fathead bagels on a white plate

Do You Use Coconut or Almond Flour for this Recipe?

I recommend almond flour. Coconut and almond flour absorb moisture differently. 

cooked keto fathead bagels on a white plate

How to Store the Bagels

I store mine in sealable plastic bags in the fridge. They will last up to a week in the fridge.

cooked keto fathead bagel sandwich with bacon and eggs

Freezer Tips

The bagels will last for 2 months in the freezer in an airtight container or bag.

More Keto Breakfast Recipes

Bacon Egg Spinach Breakfast Casserole
Keto Cinnamon Roll Chaffles
Keto Blueberry Muffins

Keto Pancakes
Keto Biscuits and Gravy

Popular Keto Recipes

Keto Cheeseburger Casserole 
Keto Philly Cheesesteak Casserole
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cooked keto fathead bagels on a blue plate with cream cheese
Print Pin
5 from 34 votes

Keto Low-Carb Bagels

These Easy Keto Low-Carb Everything Bagels are the best quick recipe using almond flour fathead dough with only 2 net carbs each. Each gluten-free bagel is loaded with flavor and seasoned with Everything, But the Bagel Seasoning.
Save this recipe here.
Course Breakfast
Cuisine American
Keyword keto bagels, low carb bagels
Prep Time 15 minutes
Cook Time 20 minutes
Total Time 35 minutes
Servings 8
Calories 298kcal


  • 1 1/2 cups almond flour
  • 2 teaspoons baking powder
  • 2 oz cream cheese
  • 3 cups shredded mozzarella cheese
  • 2 eggs (beaten)
  • Everything But the Bagel Seasoning see below on how to make your own

Homemade Everything But the Bagel Seasoning

  • 2 teaspoons white sesame seeds
  • 1 1/2 teaspoons black sesame seeds
  • 1 teaspoon dried minced onion
  • 1 teaspoon dried minced garlic
  • 1 teaspoon sea salt or kosher salt
  • 1/2 teaspoon poppyseeds


  • Watch the video instructions above.
  • Preheat oven to 400 degrees.
  • Add the almond flour and baking powder to a large bowl. Stir to combine.
  • Add the cream cheese and shredded mozzarella to a separate bowl. Microwave for 60 seconds.
  • Remove the bowl from the microwave. 
  • Stir in the almond flour. The mixture may become really thick and difficult to stir. If so, place the bowl back in the microwave for another 30 seconds.
    Remove from the microwave and stir. Add in the egg. Stir until the mixture forms dough. Ensure the cheese is fully melted and mixed. If there are large pieces of cheese, they will form on the outside of the bagel.
  • Wet your hands with water. Knead the dough with your hands to form one large ball.
  • Use a silicone spoon to scoop out 8 balls of dough. You will likely need to wet your hands in between forming each ball.  Place them on the silicone baking mat.
  • Use your fingers or a butter knife to create a circle in the middle of each ball. As the dough bakes and rises in the oven, the holes will close up some. Be sure to make the holes large enough so that when the dough rises and spreads the bagel doesn’t close completely. You can also check in on the bagels while they are in the oven. If you see the circles closing up, use a knife to open them back up.
  • Wet a cooking brush or your hands and wet the top of each bagel. This will help the seasoning stick.
  • Sprinkle the Everything but the Bagel Seasoning throughout each bagel.
  • Bake for 15-20 minutes until golden-brown. Mine were ready right at 20 minutes.



Tip: If you are looking for more savory flavor, add a teaspoon of Italian seasoning to the cream cheese and mozzarella mixture before forming dough.
Recipe Tools Used in this RecipeAs an Amazon Associate I earn from qualifying purchases.

Nutrition (displayed with net carbs)

Serving: 1bagel | Calories: 298kcal | Carbohydrates: 2g | Protein: 19g | Fat: 21g
Easy Keto Chicken RecipesCheck out 20 Keto Low-Carb Chicken Recipes here!
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Nutrition DataMacros are provided as a courtesy and should not be construed as a guarantee. This information is calculated using To obtain the most accurate nutritional information in a given recipe, you should calculate the nutritional information with the actual ingredients used in your recipe, using your preferred nutrition calculator. You are solely responsible for ensuring that any nutritional information provided is accurate, complete, and useful.
Recipe Rating


Tuesday 15th of August 2023

These were such a great treat for anyone but especially those who are gf and really miss a bagel. These were delicious and I will definitely be making them again with a variety of toppings! Thank you so much!


Tuesday 15th of August 2023

You're welcome! I'm glad you enjoyed them.


Monday 6th of February 2023

This was so easy to make. These were delicious, and really satisfied that bagel craving. Next I will change almond flour brand as the one I tried was a little grainy.

Will definitely make again!!

Would love to recipes for other bagel flavors, like blueberry, strawberry, etc.


Wednesday 8th of February 2023

I'm glad you enjoyed them!


Saturday 26th of March 2022

I made these last night, very easy to make. I didn't have the everything but bagel seasoning but topped them with some extra sharp shredded cheese. They are good but I was wondering if the mozzarella cheese could be decreased so the bagel has a bit more bread consistency?


Saturday 26th of March 2022

Feel free to test it out and let me know! I love the consistency of the recipe.


Saturday 5th of March 2022

Fantastic whole family loved them Thank-you! I wish I could do a photo they are so pretty....:)


Sunday 6th of March 2022

I'm so glad to hear that!


Wednesday 13th of October 2021

When in doubt always check first to see if Brandi got the recipe these bagels turned out perfectly delicious! Thanks Brandi


Thursday 14th of October 2021

You're welcome! I'm glad you enjoyed these!